Introduction to NGS data analysis
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Published

January 1, 2022

Modified

May 20, 2025

Course slides

Course material 2022

Here you find a table with the instructor’s slides from 2022.

Topic Slide Notebook
Sequencing technologies link –
Mapping to reference link Notebook
Data visualization link –
SNPs and structural variants link Notebook
RNA sequencing link Notebook
De-novo assembly link –
Microbiomes and metagenomics link –
Single cell RNA sequencing link Notebook

Course material 2024

Here you find a table with the instructor’s slides and a link to the compiled notebooks, that you can also run on your own following the instructions in this webpage. Data alignment can also be performed on the Galaxy interactive webpage (see the galaxy exercise in this webpage).