Welcome

Welcome to the scVerse 2024 conference workshop on Data visualization and interactive documentation.

Abstract

Here you will go through some different ways of projecting single cell data. You start with PCA-based projections, then move to geometry-based projections and diagnostic ways of choosing the method which matches best your data. At the end, you will

• understand briefly the difference between modeling distances and geometry
• know how to apply the methods with scanpy
• be able to compare the methods and their distortions to choose the one fitting best your data
• create interactive plots for your webpage documentation

Webpage menu

On the header of this page you can also see the publishing guide for github pages (using the template for this webpage), and you can look at the tutorial rendered in web format.

Slides

You can download the slides of the workshop from the link below

 

Slides of the workshop

 

Notebook

The rendered notebook accessible from the top menu is for future reference and already compiled. To run the notebooks, please download from the button below and upload it on google colab:

 

Google colab version

 

If you want to use your own computer’s jupyterlab, use instead the notebook below

 

Jupyterlab version